world of amoeboid organisms

Menu

Collecting amoebae

I get my material from all kinds of water, but especially from freshwater marshes and ditches in the ventral area of the Netherlands. This region has very different types of water, from oligotrophic to eutrophic, from peat swamps to lakes, from streams to standing water. I always have some small tubes in my pocket, in case there is an opportunity to sample something. I usually collect amoebae from the sediment of ponds and ditches.

My favorite deeper water tool to collect amoebae is a jar tied on a long thin rope or an extendable pole. I toss the jar into the water, wait for it to reach the bottom, then pull a little to move the jar and let some sediment swirl into the jar. Then I pull the jar out of the water and transfer the sample to a clean glass. I label the glass with the sample location name and date. I also take a photo of each sample on location. My camera puts the GPS coordinates and time in the photo.

I use the jar-on-a-string method because the bottom of most ponds and lakes here is covered with a thick layer of decomposing organic matter. That’s why I usually don’t have any problems with sand grains in my samples, which can be very annoying in a wet mount. Sand can cause several problems with slides. When I collect material from water with a sandy bottom, usually covered with a thin layer of decomposing organic material, I try not to absorb the sand and when possible, I use a large pipet.

Siemensma
Siemensma
Very handy for shallow water, an extendable stick with jar

At home, I scan the samples within 24 hours to see if they’re worth studying further. Promising samples are stored at room temperature, avoiding exposure to direct sunlight. I usually leave about three inches of water above the sediment. Depending on the nutrients and the associated microbial sequence, samples can stand for two days or months.

In the spring pieces of soil material float due to algae activity. This material can be very rich in all kinds of amoebae, e.g. great Chaos amoebae. I get this material with a pot on a long stick.

Aquatic plants and wet mosses are squeezed by hand, causing the water to flow into a glass. Then I filter these samples to remove larger particles such as moss leaves. Dry mosses are collected in a plastic bag. At home I put them in a large bowl and add rainwater. Then I stir and squeeze, remove the plants, let it settle and collect the residue in a smaller glass.

I use an inverted microscope to find and isolate large testate amoebae with a shell that can easily crash under a coverslip in a normal wet mount. After isolating the shell, I cover it with a slip, supported by some pieces of a broken coverslip. I also use an inverted microscope to isolate amoebae for staining, mounting and culturing.

Recent posts

Organic-walled species

Specimen with an optical cross-section of the peduncle (left) Organic-walled species Diagnosis: Multinucleated organic-walled monothalamous foraminifera. Test spherical to oval shaped, with a hyaline, flexible,

Read More »

Velamentofex tyrolensis

V. tyrolensis, two specimens Velamentofex tyrolensis Völcker and Clauß, 2020 April 2022, I found two specimens in a sample from the pond in Crailoo, Netherlands. I could

Read More »

Raphidiophrys spec. nov.

Raphidiophrys n. sp. Raphidiophrys n. sp. Diagnosis: Plate-scales canoe-shaped, elongated, with tapering, rounded poles, slightly curved upwardly. Light microscopically, these plate-scales show a clear rim;

Read More »

Lacogromia spec. Naardermeer

Lacogromia sp., Naardermeer, the Netherlands, 2022 (n=nucleus) Lacogromia sp. Six living specimens were found in an old sediment sample from a freshwater ditch in nature

Read More »

Sphenoderia rhombophora

S. rhombophora , after Bonnet, 1966 Sphenoderia rhombophora Bonnet, 1966 Diagnosis: Test hyaline, ellipsoidal, very slightly compressed. Fundus relatively narrow. Pseudostome largely truncated. Neck very

Read More »

Sphenoderia ovoidea

S. ovoidea , after Jung, 1942 Sphenoderia ovoidea Jung, 1942 Diagnosis: Shell with four layers of plate-scales. Distinguished from S. fissirostris by the ovoid tapering

Read More »

Sphenoderia truncata

S. truncata , after Van Oye, 1949 Sphenoderia truncata Van Oye, 1949 Diagnosis: Shell smooth and diaphanous, with usually pentagonal, sometimes hexagonal, inconspicuous plates. The

Read More »

Nebela gimlii

N. gimlii, from Singer and Lara, 2015 Nebela gimlii Singer and Lara, 2015 Diagnosis: Test wide pyriform or drop-shaped, laterally compressed, with a protruding narrow

Read More »

Sphenoderia, with granules

Overview Sphenoderia S. compressa S. fissirostris S. labiata S. lenta S. macrolepis S. minuta S. ovoidea S. rhombophora S. sphaerica S. splendida S. truncata

Read More »

Nebela overview

Nebela overview N. acolla N. aliciae N. aliciae N. barbata N. bohemica N. carinatella N. collaris N. flabellulum N. gimlii N. golemanskyi N. nebeloides N.

Read More »